If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ), 'gf_id' => 'HOM05D000926', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000926' ), 'data_identifier' => 'HOM05D000926', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000926', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '650', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17000' => 'bna', 'A03p60950' => 'bna', 'A06p35710' => 'bna', 'A06p39650' => 'bna', 'A09p56130' => 'bna', 'Aa31LG11G4120' => 'aar', 'Aa31LG2G18610' => 'aar', 'Aa31LG3G13520' => 'aar', 'Aa31LG9G16890' => 'aar', 'Aa31sc359G10' => 'aar', 'Actinidia04116' => 'ach', 'Actinidia04715' => 'ach', 'Actinidia06443' => 'ach', 'Actinidia17614' => 'ach', 'Actinidia18965' => 'ach', 'Actinidia22272' => 'ach', 'Actinidia24535' => 'ach', 'Actinidia26283' => 'ach', 'Actinidia38647' => 'ach', 'Ah.09g229670' => 'amhyb', 'Ah.10g038410' => 'amhyb', 'Ah.10g038420' => 'amhyb', 'Ah.12g060490' => 'amhyb', 'Ah.14g083990' => 'amhyb', 'Ah.16g100750' => 'amhyb', 'Ah.16g100760' => 'amhyb', 'Ah.16g100770' => 'amhyb', 'AL4G15740' => 'aly', 'AL5G20390' => 'aly', 'AL6G36590' => 'aly', 'AL7G20290' => 'aly', 'AL7G27280' => 'aly', 'AL8G33710' => 'aly', 'Aqoxy3G00594' => 'aox', 'Aqoxy3G00596' => 'aox', 'Aqoxy3G03796' => 'aox', 'Aqoxy3G03797' => 'aox', 'Aqoxy7G02467' => 'aox', 'Aqoxy7G03167' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G1U1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGLY17' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUC516' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ES33NP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HG26LZ' => 'arhy', 'AT2G24762' => 'ath', 'AT3G30725' => 'ath', 'AT4G25760' => 'ath', 'AT4G31730' => 'ath', 'AT5G24920' => 'ath', 'AT5G57685' => 'ath', 'ATR0580G037' => 'atr', 'ATR0691G108' => 'atr', 'Atru.chr12.694' => 'acertr', 'Atru.chr12.704' => 'acertr', 'Atru.chr12.705' => 'acertr', 'Atru.chr12.714' => 'acertr', 'Atru.chr12.717' => 'acertr', 'Atru.chr2.1223' => 'acertr', 'Atru.chr7.2604' => 'acertr', 'Atru.chr7.574' => 'acertr', 'Atru.chr9.649' => 'acertr', 'AUR62009441' => 'cqu', 'AUR62009442' => 'cqu', 'AUR62020304' => 'cqu', 'AUR62023119' => 'cqu', 'AUR62023120' => 'cqu', 'AUR62023127' => 'cqu', 'AUR62035216' => 'cqu', 'AUR62037696' => 'cqu', 'AUR62039982' => 'cqu', 'BcaB04g20533' => 'bca', 'BcaB05g22360' => 'bca', 'BcaB08g36126' => 'bca', 'BcaB08g36127' => 'bca', 'BcaC02g11696' => 'bca', 'BcaC03g14134' => 'bca', 'BcaC04g19937' => 'bca', 'BcaC06g30841' => 'bca', 'BcaC06g32785' => 'bca', 'BcaC06g32786' => 'bca', 'BcaC07g40909' => 'bca', 'BcaC09g50748' => 'bca', 'BcaC09g51964' => 'bca', 'BcaNung01504' => 'bca', 'BcaNung04116' => 'bca', 'BcaNung04122' => 'bca', 'BcaNung05180' => 'bca', 'BcaNung05181' => 'bca', 'BcaNung05640' => 'bca', 'BcaNung05641' => 'bca', 'BcaNung05642' => 'bca', 'BcaNung07367' => 'bca', 'BolC1t00712H' => 'bol', 'BolC1t02055H' => 'bol', 'BolC2t07523H' => 'bol', 'BolC7t44811H' => 'bol', 'BolC7t45939H' => 'bol', 'BolC7t46332H' => 'bol', 'BolC8t51481H' => 'bol', 'BolC9t57811H' => 'bol', 'BraA01t00614Z' => 'bra', 'BraA01t01656Z' => 'bra', 'BraA03t14697Z' => 'bra', 'BraA03t15135Z' => 'bra', 'BraA06t26495Z' => 'bra', 'BraA06t26880Z' => 'bra', 'BraA09t41008Z' => 'bra', 'C01p07200' => 'bna', 'C01p21320' => 'bna', 'C03p14850' => 'bna', 'C04p12220' => 'bna', 'C07p42830' => 'bna', 'C08p39090' => 'bna', 'CAN.G396.11' => 'can', 'CAN.G497.35' => 'can', 'CAN.G497.36' => 'can', 'CAN.G566.57' => 'can', 'CAN.G566.58' => 'can', 'CAN.G584.29' => 'can', 'CAN.G93.43' => 'can', 'CANSAT11G0083' => 'cansat', 'CANSAT25G3102' => 'cansat', 'CANSAT64G0443' => 'cansat', 'CANSAT64G2072' => 'cansat', 'CARHR116830' => 'chi', 'CARHR188520' => 'chi', 'CARHR233210' => 'chi', 'CARHR271440' => 'chi', 'Carub.0004s0440' => 'cru', 'Carub.0006s2278' => 'cru', 'Carub.0007s0883' => 'cru', 'Carub.0007s1520' => 'cru', 'Carub.0008s1819' => 'cru', 'Carub.0009s0001' => 'cru', 'Ca_13080_v3' => 'car', 'Ca_15794_v3' => 'car', 'Ca_21193_v3' => 'car', 'Cc06_g13710' => 'ccan', 'Cc07_g04740' => 'ccan', 'Cc08_g06360' => 'ccan', 'CDE02G3554' => 'cde', 'CDE04G3009' => 'cde', 'Cfa007729' => 'cfa', 'Cfa007730' => 'cfa', 'Cfa007731' => 'cfa', 'Cfa013001' => 'cfa', 'Cfa013532' => 'cfa', 'Ciclev10009695m.g' => 'ccl', 'Ciclev10009784m.g' => 'ccl', 'Ciclev10013138m.g' => 'ccl', 'Ciclev10013175m.g' => 'ccl', 'Ciclev10023021m.g' => 'ccl', 'CiPaw.03G077200' => 'cil', 'CiPaw.03G080100' => 'cil', 'CiPaw.03G080200' => 'cil', 'CiPaw.03G080300' => 'cil', 'CiPaw.07G188500' => 'cil', 'CiPaw.07G233900' => 'cil', 'CiPaw.08G003900' => 'cil', 'CiPaw.08G038300' => 'cil', 'CiPaw.16G081100' => 'cil', 'ClCG05G016030' => 'cla', 'ClCG06G013060' => 'cla', 'ClCG06G015310' => 'cla', 'ClCG07G016190' => 'cla', 'ClCG07G016210' => 'cla', 'ClCG08G013870' => 'cla', 'ClCG11G005090' => 'cla', 'ClCG11G012280' => 'cla', 'COL.COLO4_16091' => 'col', 'COL.COLO4_19000' => 'col', 'COL.COLO4_33437' => 'col', 'Cpa.g.c26340.3' => 'cpa', 'Cpa.g.sc23.52' => 'cpa', 'Cpa.g.sc70.7' => 'cpa', 'Cpa.g.sc95.79' => 'cpa', 'CsaV3_1G003190' => 'csa', 'CsaV3_1G031200' => 'csa', 'CsaV3_2G032650' => 'csa', 'CsaV3_4G009780' => 'csa', 'CsaV3_4G009860' => 'csa', 'CsaV3_4G036310' => 'csa', 'CSS0017323' => 'camsi', 'CSS0039821' => 'camsi', 'CSS0042314' => 'camsi', 'CSS0045695' => 'camsi', 'CSS0047994' => 'camsi', 'DCAR_002020' => 'dca', 'DCAR_002021' => 'dca', 'DCAR_007536' => 'dca', 'DCAR_007538' => 'dca', 'DCAR_010193' => 'dca', 'DCAR_010990' => 'dca', 'DCAR_026290' => 'dca', 'Dinv06810' => 'din', 'Dinv33888' => 'din', 'Dinv34883' => 'din', 'Dinv38621' => 'din', 'Dinv41288' => 'din', 'Dinv42764' => 'din', 'Duzib084G1204' => 'dzi', 'Duzib133G0632' => 'dzi', 'Duzib138G1110' => 'dzi', 'Duzib138G1671' => 'dzi', 'Duzib150G0248' => 'dzi', 'Duzib168G1251' => 'dzi', 'Duzib168G1758' => 'dzi', 'Duzib187G1545' => 'dzi', 'Duzib187G1771' => 'dzi', 'Duzib211G0100' => 'dzi', 'ECA232G0239' => 'eca', 'ECA232G3566' => 'eca', 'ECA234G2797' => 'eca', 'ECA234G3555' => 'eca', 'ECA236G1951' => 'eca', 'ECA236G2977' => 'eca', 'ECA236G4227' => 'eca', 'ECA236G4338' => 'eca', 'ECA236G4878' => 'eca', 'ECA236G4981' => 'eca', 'ECA238G4493' => 'eca', 'ECA240G1978' => 'eca', 'EL10Ac2g02434' => 'bvu', 'EL10Ac2g04399' => 'bvu', 'EL10Ac2g04400' => 'bvu', 'EL10Ac8g18258' => 'bvu', 'Eucgr.C02429' => 'egr', 'Eucgr.C04021' => 'egr', 'Eucgr.C04022' => 'egr', 'Eucgr.J01435' => 'egr', 'Eucgr.J01436' => 'egr', 'Eucgr.J01437' => 'egr', 'Eucgr.J01438' => 'egr', 'Eucgr.J01439' => 'egr', 'FAN02G4043' => 'fan', 'FAN05G2016' => 'fan', 'FAN05G2979' => 'fan', 'FAN07G0458' => 'fan', 'FAN11G0072' => 'fan', 'FAN12G2971' => 'fan', 'FAN16G0420' => 'fan', 'FAN17G1743' => 'fan', 'FAN22G0045' => 'fan', 'FvH4_3g37350' => 'fve', 'FvH4_4g08450' => 'fve', 'FvH4_6g45911' => 'fve', 'Glyma.04G058800' => 'gma', 'Glyma.06G059500' => 'gma', 'Glyma.08G254800' => 'gma', 'Glyma.08G254900' => 'gma', 'Glyma.13G093500' => 'gma', 'Glyma.14G105200' => 'gma', 'Glyma.17G066900' => 'gma', 'Glyma.17G220900' => 'gma', 'Glyma.18G277600' => 'gma', 'Glyma.18G277800' => 'gma', 'Glyma.19G038700' => 'gma', 'Gohir.A03G072800' => 'ghi', 'Gohir.A05G062600' => 'ghi', 'Gohir.A06G104200' => 'ghi', 'Gohir.A07G034350' => 'ghi', 'Gohir.A07G077666' => 'ghi', 'Gohir.A07G178200' => 'ghi', 'Gohir.A08G087100' => 'ghi', 'Gohir.A13G211500' => 'ghi', 'Gohir.D03G099400' => 'ghi', 'Gohir.D05G065100' => 'ghi', 'Gohir.D06G106200' => 'ghi', 'Gohir.D07G037950' => 'ghi', 'Gohir.D07G082340' => 'ghi', 'Gohir.D07G082400' => 'ghi', 'Gohir.D07G185000' => 'ghi', 'Gohir.D08G096600' => 'ghi', 'Gohir.D13G215500' => 'ghi', 'Gorai.001G039700' => 'gra', 'Gorai.001G087900' => 'gra', 'Gorai.001G088000' => 'gra', 'Gorai.001G205500' => 'gra', 'Gorai.003G104400' => 'gra', 'Gorai.004G102600' => 'gra', 'Gorai.009G065800' => 'gra', 'Gorai.010G120700' => 'gra', 'Gorai.013G245900' => 'gra', 'GSVIVG01036505001' => 'vvi', 'HanXRQChr05g0136701' => 'han', 'HanXRQChr05g0136711' => 'han', 'HanXRQChr05g0136721' => 'han', 'HanXRQChr05g0136731' => 'han', 'HanXRQChr06g0179141' => 'han', 'HanXRQChr06g0179161' => 'han', 'HanXRQChr06g0179171' => 'han', 'HanXRQChr08g0214991' => 'han', 'HanXRQChr09g0263271' => 'han', 'HanXRQChr09g0263311' => 'han', 'HanXRQChr10g0307921' => 'han', 'HanXRQChr12g0358081' => 'han', 'HanXRQChr12g0380091' => 'han', 'HanXRQChr14g0439461' => 'han', 'HanXRQChr14g0439481' => 'han', 'HanXRQChr14g0447991' => 'han', 'Haze_14349' => 'cav', 'Haze_21359' => 'cav', 'Haze_21365' => 'cav', 'Hma1.2p1_0156F.1_g068910' => 'hma', 'Hma1.2p1_0588F.1_g184540' => 'hma', 'Hma1.2p1_0588F.1_g184550' => 'hma', 'Hma1.2p1_0595F.1_g186210' => 'hma', 'Hma1.2p1_0790F.1_g218420' => 'hma', 'Hma1.2p1_1261F.1_g271110' => 'hma', 'Hma1.2p1_2231F.1_g317570' => 'hma', 'Hma1.2p1_2231F.1_g317580' => 'hma', 'HPP92_005300' => 'vpl', 'HPP92_010480' => 'vpl', 'HPP92_010754' => 'vpl', 'HPP92_013477' => 'vpl', 'HPP92_017153' => 'vpl', 'HPP92_018521' => 'vpl', 'Lalb_Chr07g0180201' => 'lal', 'Lalb_Chr08g0234491' => 'lal', 'Lalb_Chr08g0234571' => 'lal', 'Lalb_Chr08g0244571' => 'lal', 'Lalb_Chr10g0092471' => 'lal', 'Lalb_Chr10g0092481' => 'lal', 'Lalb_Chr11g0063451' => 'lal', 'Lalb_Chr11g0072341' => 'lal', 'Lalb_Chr11g0072351' => 'lal', 'Lalb_Chr12g0199171' => 'lal', 'Lalb_Chr13g0300411' => 'lal', 'Lalb_Chr14g0375401' => 'lal', 'Lalb_Chr21g0318771' => 'lal', 'Lalb_Chr22g0349671' => 'lal', 'Lalb_Chr23g0268101' => 'lal', 'Lj1g0009060' => 'lja', 'Lj1g0010988' => 'lja', 'Lj1g0017144' => 'lja', 'Lj1g0022964' => 'lja', 'Lj4g0013069' => 'lja', 'Lj5g0027171' => 'lja', 'Lj7C741T14' => 'lonja', 'Lj7C741T17' => 'lonja', 'Lj9P732T10' => 'lonja', 'Lj9P732T8' => 'lonja', 'Lj9P733T6' => 'lonja', 'Lj9P733T7' => 'lonja', 'Lju361C12T10' => 'lonja', 'Lsat_1_v5_gn_2_86081' => 'lsa', 'Lsat_1_v5_gn_3_95661' => 'lsa', 'Lsat_1_v5_gn_4_174621' => 'lsa', 'Lsat_1_v5_gn_4_174781' => 'lsa', 'Lsat_1_v5_gn_4_174821' => 'lsa', 'Lsat_1_v5_gn_5_86620' => 'lsa', 'Lsat_1_v5_gn_5_86680' => 'lsa', 'Lsat_1_v5_gn_7_51560' => 'lsa', 'Lsat_1_v5_gn_8_65120' => 'lsa', 'Lsat_1_v5_gn_8_66661' => 'lsa', 'Lsat_1_v5_gn_8_66681' => 'lsa', 'Lsat_1_v5_gn_8_66721' => 'lsa', 'Lsat_1_v5_gn_8_66741' => 'lsa', 'Lsat_1_v5_gn_8_66781' => 'lsa', 'Manes.01G105800' => 'mes', 'Manes.01G105900' => 'mes', 'Manes.01G106100' => 'mes', 'Manes.02G062400' => 'mes', 'Manes.02G062600' => 'mes', 'Manes.03G005800' => 'mes', 'Manes.05G115600' => 'mes', 'Manes.06G021600' => 'mes', 'Manes.06G028600' => 'mes', 'Manes.16G133400' => 'mes', 'Mapoly0054s0107' => 'mpo', 'MBI14_g26431_MAGBIO' => 'mbi', 'MBI15_g03197_MAGBIO' => 'mbi', 'MBI16_g00672_MAGBIO' => 'mbi', 'MD08G1049400' => 'mdo', 'MD09G1078800' => 'mdo', 'MD09G1078900' => 'mdo', 'MD13G1263000' => 'mdo', 'MD16G1264600' => 'mdo', 'MD17G1069100' => 'mdo', 'MD17G1069200' => 'mdo', 'Medtr0542s0020' => 'mtr', 'Medtr1g013410' => 'mtr', 'Medtr1g013430' => 'mtr', 'Medtr3g105690' => 'mtr', 'Medtr4g129020' => 'mtr', 'Medtr6g016480' => 'mtr', 'Medtr7g018090' => 'mtr', 'MELO3C004042.2' => 'cme', 'MELO3C011319.2' => 'cme', 'MELO3C016938.2' => 'cme', 'MELO3C017503.2' => 'cme', 'MELO3C018921.2' => 'cme', 'MELO3C018927.2' => 'cme', 'MELO3C022064.2' => 'cme', 'Migut.A00402' => 'egut', 'Migut.E01432' => 'egut', 'Migut.H00567' => 'egut', 'Migut.H00568' => 'egut', 'Migut.J01443' => 'egut', 'Migut.K00264' => 'egut', 'Migut.K00874' => 'egut', 'MSTRG.11798' => 'ama', 'MSTRG.13950' => 'ama', 'MSTRG.1620' => 'ama', 'MSTRG.19691' => 'ama', 'MSTRG.25814' => 'ama', 'MSTRG.2959' => 'ama', 'MSTRG.2960' => 'ama', 'MSTRG.3384' => 'ama', 'MSTRG.6191' => 'ama', 'Nitab4.5_0000154g0050' => 'nta', 'Nitab4.5_0000244g0110' => 'nta', 'Nitab4.5_0000668g0010' => 'nta', 'Nitab4.5_0000989g0030' => 'nta', 'Nitab4.5_0001110g0150' => 'nta', 'Nitab4.5_0001110g0160' => 'nta', 'Nitab4.5_0002171g0020' => 'nta', 'Nitab4.5_0003384g0050' => 'nta', 'Nitab4.5_0005612g0020' => 'nta', 'Nitab4.5_0005612g0030' => 'nta', 'Nitab4.5_0005612g0040' => 'nta', 'Nitab4.5_0009468g0010' => 'nta', 'Nitab4.5_0009857g0010' => 'nta', 'Nitab4.5_0013205g0010' => 'nta', 'Nn2g12621' => 'nnu', 'Nn3g17603' => 'nnu', 'Nn4g23604' => 'nnu', 'Nn7g37183' => 'nnu', 'Nn8g40369' => 'nnu', 'Oeu002539.1' => 'oeu', 'Oeu014158.1' => 'oeu', 'Oeu020958.1' => 'oeu', 'Oeu020985.1' => 'oeu', 'Oeu032515.1' => 'oeu', 'Oeu032853.1' => 'oeu', 'Oeu032854.1' => 'oeu', 'Oeu049341.1' => 'oeu', 'Oeu052234.1' => 'oeu', 'Oeu058834.1' => 'oeu', 'Os06g0633100' => 'osa', 'Os06g0654400' => 'osa', 'Os08g0249200' => 'osa', 'Os08g0446800' => 'osa', 'Peaxi162Scf00020g00201' => 'pax', 'Peaxi162Scf00020g02022' => 'pax', 'Peaxi162Scf00045g00186' => 'pax', 'Peaxi162Scf00297g00109' => 'pax', 'Peaxi162Scf00459g00081' => 'pax', 'Peaxi162Scf00479g00093' => 'pax', 'Peaxi162Scf00479g00101' => 'pax', 'Peaxi162Scf00942g00021' => 'pax', 'PGR004G2735' => 'pgr', 'PGR042G0931' => 'pgr', 'PGR042G1069' => 'pgr', 'PGR044G0045' => 'pgr', 'PGR102G2011' => 'pgr', 'PGR142G1349' => 'pgr', 'PGSC0003DMG400001476' => 'stu', 'PGSC0003DMG400001477' => 'stu', 'PGSC0003DMG400001478' => 'stu', 'PGSC0003DMG400001479' => 'stu', 'PGSC0003DMG400026291' => 'stu', 'PGSC0003DMG400027457' => 'stu', 'PGSC0003DMG400029276' => 'stu', 'PGSC0003DMG400029277' => 'stu', 'PGSC0003DMG400029541' => 'stu', 'Phvul.001G043500' => 'pvu', 'Phvul.003G149300' => 'pvu', 'Phvul.004G046300' => 'pvu', 'Phvul.008G023400' => 'pvu', 'Phvul.009G085200' => 'pvu', 'Potri.004G108440' => 'ptr', 'Potri.004G108560' => 'ptr', 'Potri.004G108680' => 'ptr', 'Potri.004G108800' => 'ptr', 'Potri.006G173901' => 'ptr', 'Potri.006G267900' => 'ptr', 'Potri.017G107100' => 'ptr', 'Potri.017G107200' => 'ptr', 'Potri.017G107300' => 'ptr', 'Potri.017G107400' => 'ptr', 'Potri.018G013600' => 'ptr', 'Prupe.1G094400' => 'ppe', 'Prupe.1G399200' => 'ppe', 'Prupe.3G245300' => 'ppe', 'Prupe.3G245400' => 'ppe', 'Psat0s1897g0040' => 'psa', 'Psat0s2127g0040' => 'psa', 'Psat1g064600' => 'psa', 'Psat1g064720' => 'psa', 'Psat1g064800' => 'psa', 'Psat3g193240' => 'psa', 'Psat3g193280' => 'psa', 'Psat3g193320' => 'psa', 'Psat3g193960' => 'psa', 'Psat4g011960' => 'psa', 'PSO017G6561' => 'pso', 'PSO063G3264' => 'pso', 'PSO170G4593' => 'pso', 'PSO210G5547' => 'pso', 'PSO478G4837' => 'pso', 'PSO541G5462' => 'pso', 'PSO675G3887' => 'pso', 'PSO782G3113' => 'pso', 'QL02p017700' => 'qlo', 'QL02p063836' => 'qlo', 'QL02p063866' => 'qlo', 'QL02p063891' => 'qlo', 'QL02p096618' => 'qlo', 'QL12p013689' => 'qlo', 'RcHm_v2.0_Chr2g0164101' => 'rch', 'RcHm_v2.0_Chr2g0164151' => 'rch', 'RcHm_v2.0_Chr2g0164161' => 'rch', 'RcHm_v2.0_Chr4g0403911' => 'rch', 'RcHm_v2.0_Chr4g0410191' => 'rch', 'RcHm_v2.0_Chr5g0067181' => 'rch', 'RcHm_v2.0_Chr7g0208061' => 'rch', 'Rhsim01G0009200' => 'rsi', 'Rhsim01G0084200' => 'rsi', 'Rhsim03G0107100' => 'rsi', 'Rhsim03G0107600' => 'rsi', 'Rhsim03G0262400' => 'rsi', 'Rhsim07G0168600' => 'rsi', 'Rhsim08G0078900' => 'rsi', 'Sabra04G0073800' => 'sbr', 'Sabra04G0073900' => 'sbr', 'Sabra04G0074000' => 'sbr', 'Sabra06G0133500' => 'sbr', 'Sabra06G0210000' => 'sbr', 'Sabra17G0090000' => 'sbr', 'Sabra17G0090100' => 'sbr', 'Sabra17G0090200' => 'sbr', 'Sabra18G0017400' => 'sbr', 'SalBow1G1348' => 'sbo', 'SalBow1G1369' => 'sbo', 'SalBow1G7500' => 'sbo', 'SalBow4G1911' => 'sbo', 'SalBow6G6246' => 'sbo', 'SalBow8G3212' => 'sbo', 'SalBow8G3466' => 'sbo', 'Sc09g0010810' => 'sci', 'Sc10g0000430' => 'sci', 'Sc10g0000440' => 'sci', 'Sc11g0008980' => 'sci', 'Sc15g0001100' => 'sci', 'Sed0002961' => 'sed', 'Sed0009643' => 'sed', 'Sed0010198' => 'sed', 'Sed0014083' => 'sed', 'Sed0015600' => 'sed', 'Sed0018092' => 'sed', 'Sed0020062' => 'sed', 'Sed0026154' => 'sed', 'SEGI_00662' => 'sgi', 'SEGI_02174' => 'sgi', 'SEGI_03245' => 'sgi', 'SEGI_07262' => 'sgi', 'SEGI_07693' => 'sgi', 'SEGI_08130' => 'sgi', 'SEGI_09682' => 'sgi', 'SEGI_11772' => 'sgi', 'SEGI_12639' => 'sgi', 'SEGI_13603' => 'sgi', 'SEGI_22836' => 'sgi', 'SEGI_24266' => 'sgi', 'SEGI_32804' => 'sgi', 'SEGI_36628' => 'sgi', 'SEGI_37455' => 'sgi', 'SEGI_38492' => 'sgi', 'SEGI_39347' => 'sgi', 'SGA_v2.0_scaffold12G06050' => 'sas', 'SGA_v2.0_scaffold27G11643' => 'sas', 'SGA_v2.0_scaffold4G02343' => 'sas', 'SGA_v2.0_scaffold52G19042' => 'sas', 'SGA_v2.0_scaffold66G22488' => 'sas', 'SGA_v2.0_scaffold69G23286' => 'sas', 'Solyc02g089450.1' => 'sly', 'Solyc02g089460.1' => 'sly', 'Solyc02g089470.1' => 'sly', 'Solyc02g089480.1' => 'sly', 'Solyc07g006600.1' => 'sly', 'Solyc08g006520.1' => 'sly', 'Solyc12g096480.1' => 'sly', 'Solyc12g096490.1' => 'sly', 'Sopen02g034200' => 'spe', 'Sopen02g034210' => 'spe', 'Sopen02g034220' => 'spe', 'Sopen07g002680' => 'spe', 'Sopen08g002480' => 'spe', 'Sopen12g032310' => 'spe', 'Sopen12g032320' => 'spe', 'Sp2g18220' => 'spa', 'Sp2g22530' => 'spa', 'Sp4g03730' => 'spa', 'Sp6g19370' => 'spa', 'Sp7g23790' => 'spa', 'Sp7g29530' => 'spa', 'TAR374G1048' => 'tar', 'TAR383G0697' => 'tar', 'TAR626G0668' => 'tar', 'TAR629G1973' => 'tar', 'TAR636G2923' => 'tar', 'THA.LOC104799024' => 'tha', 'THA.LOC104803458' => 'tha', 'THA.LOC104803603' => 'tha', 'THA.LOC104805541' => 'tha', 'THA.LOC104811814' => 'tha', 'THA.LOC104814978' => 'tha', 'THA.LOC104817808' => 'tha', 'THA.LOC109116337' => 'tha', 'Thecc.03G112300' => 'tca', 'Thecc.04G112800' => 'tca', 'Thecc.04G112900' => 'tca', 'Thecc.04G113000' => 'tca', 'Thecc.09G010900' => 'tca', 'Thecc.09G164400' => 'tca', 'Thhalv10000360m.g' => 'esa', 'Thhalv10005084m.g' => 'esa', 'Thhalv10005496m.g' => 'esa', 'Thhalv10016008m.g' => 'esa', 'Thhalv10026569m.g' => 'esa', 'Thhalv10026865m.g' => 'esa', 'TPR.G15947' => 'tpr', 'TPR.G1895' => 'tpr', 'TPR.G3243' => 'tpr', 'TPR.G3253' => 'tpr', 'TPR.G38905' => 'tpr', 'TPR.G38908' => 'tpr', 'TPR.G5343' => 'tpr', 'TPR.G8547' => 'tpr', 'TWI32G1064' => 'twi', 'TWI34G1315' => 'twi', 'TWI34G1370' => 'twi', 'TWI60G0878' => 'twi', 'TWI63G0104' => 'twi', 'TWI63G1438' => 'twi', 'unitig_747.g21385' => 'ugi', 'unitig_747.g21897' => 'ugi', 'vmacro06035' => 'vma', 'VMungo0647G0297' => 'vmu', 'VMungo1215G1083' => 'vmu', 'VMungo1309G0762' => 'vmu', 'VMungo1383G3177' => 'vmu', 'Zm00001eb040900' => 'zma', 'Zm00001eb177090' => 'zma', 'Zm00001eb206530' => 'zma', 'Zm00001eb233820' => 'zma', 'Zm00001eb274890' => 'zma', 'Zm00001eb389560' => 'zma', 'Zm00001eb412900' => 'zma' ) $gf_id = 'HOM05D000926' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000926' ) $data_identifier = 'HOM05D000926' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 5, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 8, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 12, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 1, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 8, 'vpl' => (int) 6, 'lal' => (int) 15, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 11, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 7, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 17, 'sas' => (int) 6, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412900' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1